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Inhaltsverzeichnis

Seite 1 - Getting Started

Getting Started GuidePhoenix™ WinNonlin® 6.1Phoenix™ Connect 1.1Phoenix™ NLME 1.0

Seite 2 - Phoenix™

PhoenixGetting Started Guide41Supported Pharsight software*When used in conjunction with PKS 4.0. Phoenix does not interact directly with PKS Reporter

Seite 3

InstallationInstalling Phoenix51Phoenix can coexist with all current Pharsight software, including WinNonlin 5.2.1 with or without the IVIVC Toolkit.H

Seite 4

PhoenixGetting Started Guide61» If Phoenix is being installed on a computer that uses Windows 2003 Citrix Server, see “Windows 2003 Citrix Server inst

Seite 5 - Contents

InstallationInstalling Phoenix71If the computer reboots, start the installation process again by double-clicking Setup.exe after the operating system

Seite 6

PhoenixGetting Started Guide813. Read the license agreement. To accept its terms and proceed with the installa-tion, select the I AGREE option button

Seite 7

InstallationInstalling Phoenix914. Enter the appropriate user information and click Next.5. The Destination Folder screen is displayed. Accept the def

Seite 8

PhoenixGetting Started Guide1016. Select an installation type and click Next.» Typical is the default installation type. MPICH2 is not installed when

Seite 9

InstallationInstalling Phoenix111• To change the passphrase from the default, click the Set button.• In the Property Value field, enter a new passphra

Seite 10 - Supported Pharsight software

PhoenixGetting Started Guide1217. Use the Back button to return to the previous screens to make any changes to the installation. 8. Click Next to cont

Seite 11 - Installing Phoenix

InstallationInstalling Phoenix131If they are not already installed, the LegacyWNL components and Microsoft Visual C++ 2005 Redistributable are install

Seite 12 - Install Phoenix:

Phoenix™Phoenix™ WinNonlin® 6.1, Connect 1.1, and NLME 1.0 copyright ©2005-2009, Tripos, L.P. All rights reserved. This software and the accompanying

Seite 13 - Continue the installation:

PhoenixGetting Started Guide141Windows Vista installationThe Vista installation process is similar to the XP installation process with the following e

Seite 14

InstallationConfiguring Phoenix for international use151• Select a maintenance operation and click Next.» Modify is the default selection type. Modify

Seite 15

PhoenixGetting Started Guide161CAUTION: If the settings are not changed then Phoenix cannot correctly run projects that are created in the English (Un

Seite 16

InstallationOpening TCP ports for MPICH2171» Users can restrict MPICH2 to use a range of ports, and open those ports in a firewall to avoid the multip

Seite 17

PhoenixGetting Started Guide181The batch file then presents three options that allow users to open ports, close ports, or quit.• Press 1 to add the po

Seite 18

19Chapter 2LicensingInstallation and renewal of Phoenix software licensesThe chapter contains the following topics:» “Phoenix Licensing Service” on pa

Seite 19

PhoenixGetting Started Guide202License key code typesPhoenix requires the installation of a license key code. There are three types of license key cod

Seite 20

LicensingPhoenix Licensing Service212When Phoenix is purchased, customers are sent an email with the five things nec-essary to use Phoenix:– The appli

Seite 21

PhoenixGetting Started Guide222BQL XXXColumn Properties XXXColumn Transformation XXXCrossproduct Worksheets XXXFilter Worksheet XXXJoin Worksheets XXX

Seite 22 - Opening TCP ports for MPICH2

LicensingPhoenix Licensing Service232Indirect Response Model XLinear Model XMichaelis-Menten Model XPD Model XPK Model XPK/PD Model XWNL5 ASCII Format

Seite 23

of SAS Institute Inc. in the USA and other countries. Sentinel RMS is a trademark of SafeNet, Inc. Microsoft, MS, the Internet Explorer logo, MS-DOS,

Seite 24

PhoenixGetting Started Guide242WinNonlin 5.2.1 license holdersUsers who have WinNonlin 5.2.1 licenses can use Phoenix with no intervention from Pharsi

Seite 25 - Licensing

LicensingLicense Activation252WinNonlin 5.2.1 floating license serversWinNonlin license servers are not detected during the installation process on Wi

Seite 26

PhoenixGetting Started Guide262On-line activation:On-line activation allows users to activate Phoenix by connecting to Pharsight’s licensing server fr

Seite 27

LicensingLicense Activation272Online license activation1. Select the On-line option button.2. Enter the authorization code in the Authorization Code f

Seite 28

PhoenixGetting Started Guide282» In Windows XP, the default location C:\Program Files\Phar-sight\Phoenix\application\Services\Licensing.» In Windows V

Seite 29

LicensingLicense Activation292The purchased license is displayed in the Licenses list.Offline license activation1. Select the Off-line option button.2

Seite 30

PhoenixGetting Started Guide302» In Windows Vista, the default location C:\Users\username>\App-Data\Local\VirtualStore\Program Files\Phar-sight\Pho

Seite 31 - License Activation

LicensingLicense Management312The license server provided for Phoenix is Sentinel RMS server 8.x. It is avail-able for download when Phoenix is purcha

Seite 32 - On-line activation:

PhoenixGetting Started Guide322Phoenix license managerThe License Management dialog has five fields:Use the License Management dialog:1. In the Edit m

Seite 33 - Online license activation

LicensingLicense Server Management3322. Select Licensing>License Management in the Preferences dialog menu tree.Node licensesThere are no options f

Seite 34

Pharsight Corporation1699 S. Hanley Road, St. Louis, MO 63144 USAhttp://www.pharsight.com • [email protected] in binary form must

Seite 35 - Offline license activation

PhoenixGetting Started Guide342Use the License Server Management screen:1. To add a license server, enter the IP address of the server in the IP Addre

Seite 36 - Setting up a license server

35Chapter 3Testing the InstallationConfirming proper installation of the main Phoenix functionsThe following instructions test the installation of Pho

Seite 37 - License Management

PhoenixGetting Started Guide363Confirm license installationThe ability to execute different Phoenix plug-ins depends on the license type installed. Us

Seite 38

Testing the InstallationStart Phoenix and create a new project373Confirm plug-in startupThe Phoenix architecture is based on a series of plug-ins that

Seite 39 - License Server Management

PhoenixGetting Started Guide383Create a plot1. Select the workflow object in the Object Browser. In the Insert menu select Plotting>XY Plot.• The

Seite 40

Testing the InstallationStart Phoenix and create a new project3934. Click the Execute button. The Results are displayed on the Results tab.XY Plot re

Seite 41 - Testing the Installation

PhoenixGetting Started Guide403• Click the (+) signs beside Install Test>Data to expand the menu tree. • Select Bguide1 and click Select.The Bguide

Seite 42

Testing the InstallationStart Phoenix and create a new project413The results are presented as three HTML tables. Compare the tables in the Results tab

Seite 43

PhoenixGetting Started Guide423Table 3

Seite 44

Testing the InstallationConfirm model functions433Confirm model functionsThis section tests examples of noncompartmental analysis, pharmacokinetic mod

Seite 45 - XY Plot results

vContentsChapter 1 Installation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1Pharsight contact informati

Seite 46 - Table Options tab

PhoenixGetting Started Guide4439. Select items in the NCA model object’s Setup tab list to explore the model’s data mappings and option settings.10.Cl

Seite 47 - Tables 1 and 2

Testing the InstallationConfirm model functions453Core output text fileSubject=1,Form=Capsule Date:

Seite 48

PhoenixGetting Started Guide463The Settings file lists all the settings used to specify the noncompartmental anal-ysis.Settings text file/************

Seite 49 - Confirm model functions

Testing the InstallationConfirm model functions473Output DataThe NCA object creates seven results worksheets: Dosing Used, Exclusions, Final Parameter

Seite 50

PhoenixGetting Started Guide483Summary Table worksheet

Seite 51

Testing the InstallationConfirm model functions493PlotsA total of 12 plots are generated; one for each of two formulations, for each of the six subjec

Seite 52

PhoenixGetting Started Guide503Pharmacokinetic modeling1. In the File menu select Import or click the Import button. The Open File(s) dialog is displ

Seite 53 - Final Parameters worksheet

Testing the InstallationConfirm model functions513eters, and Summary Table. The Final Parameters, Secondary Parameters, and Summary Table worksheets a

Seite 54 - Summary Table worksheet

PhoenixGetting Started Guide523Text OutputThe Core output text results include all model settings and iterations, including the output from the worksh

Seite 55

Testing the InstallationConfirm model functions533The Settings file lists all the settings used to specify the noncompartmental anal-ysis.Settings tex

Seite 56

PhoenixGetting Started GuideviConfirm model functions. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 43Noncompartmenta

Seite 57

PhoenixGetting Started Guide543Some plot results are shown below.Observed Y and Predicted Y vs XPredicted Y vs Observed Y

Seite 58 - Text Output

Testing the InstallationConfirm model functions553Residual Y vs XWeighted Residual Y vs Weighted Predicted YBioequivalenceImport the data:1. In the Fi

Seite 59

PhoenixGetting Started Guide5633. In the Files of type menu select ASCII Data (*.csv;*.dat).4. Select the file Seq2Per4.csv and click Open.The Workshe

Seite 60 - Predicted Y vs Observed Y

Testing the InstallationConfirm model functions573Use the Model tab to specify settings for Bioequivalence model options. The Model tab is located und

Seite 61

PhoenixGetting Started Guide583Parameters, Least Squares Means, and Sequential Tests. The Diagnostics, Final Variance Parameters, and Sequential Tests

Seite 62

Testing the InstallationConfirm model functions593The Worksheet Import Options dialog is displayed. The dialog is used to assign options for how the d

Seite 63

PhoenixGetting Started Guide603Use the Model tab to specify settings for Bioequivalence model options. The Model tab is located underneath the Setup t

Seite 64

Testing the InstallationConfirm model functions613The output includes analysis settings and results, and three worksheets. The first two worksheets ar

Seite 65

PhoenixGetting Started Guide623

Seite 66

63Chapter 4The Phoenix User InterfaceNavigating the Phoenix applicationThis chapter presents an overview of the Phoenix user interface (UI). The diffe

Seite 67 - Ratios Test=T

1Chapter 1InstallationInstalling the Phoenix PlatformThe Getting Started Guide contains installation and licensing instructions for both Phoenix WinNo

Seite 68

PhoenixGetting Started Guide644Phoenix main interfacePhoenix Menu OptionsThe Phoenix main menu allows users to create and save projects, import data s

Seite 69 - The Phoenix User Interface

The Phoenix User InterfacePhoenix Menu Options654Note: All menu options are not always active. Inactive options are unavailable. Some options are only

Seite 70 - Phoenix Menu Options

PhoenixGetting Started Guide664– Ascii model (*.lib)– BQL Rule Set (*.phxruleset)– Excel Files (*.xls)– Image File (*.bmp;*.gif;*.jpeg;*.jpg;*.png)– L

Seite 71

The Phoenix User InterfacePhoenix Panels and Tabs674» Verify - checks if an executable object can be run.» Execute - executes an object or workflow, d

Seite 72

PhoenixGetting Started Guide684» Documents folder - contains any binary objects that do not belong in the other folders.» Workflow object - an object

Seite 73 - Phoenix Panels and Tabs

The Phoenix User InterfacePhoenix Panels and Tabs694» Contains the operational objects in a workflow.» Contains the Object Toolbox, which allows users

Seite 74 - Diagram tab

PhoenixGetting Started Guide704» The Setup tab is the default view of any newly inserted operational object.» The Setup tab gives users access options

Seite 75 - NCA Setup tab

The Phoenix User InterfacePhoenix Panels and Tabs714» The Results tab displays the results of an executed object.» Results are automatically grouped b

Seite 76 - NCA Results tab

PhoenixGetting Started Guide724» The Verification tab displays operational object status and execution error messages.Information tabNCA Information t

Seite 77 - NCA Verification tab

The Phoenix User InterfacePhoenix Panels and Tabs734» The Information tab displays information about a selected object. The name, date created, last d

Seite 78 - NCA Information tab

PhoenixGetting Started Guide21Contact Pharsight sales for purchases, license renewals and product upgrades.For licensing issues, including sales and t

Seite 79 - NCA History tab

PhoenixGetting Started Guide744

Seite 80

75Chapter 5Phoenix ConceptsAn introduction to the Phoenix platformIntroductionThis chapter provides an overview of the Phoenix architecture, definitio

Seite 81 - Phoenix Concepts

PhoenixGetting Started Guide765» This type of architecture is called a plug-in architecture because compo-nents or plug-ins, which are discrete functi

Seite 82 - Phoenix Terminology

Phoenix ConceptsPhoenix Terminology775context associations include sort, concentration, time, formulation, X-axis, Y-axis, etc.» Data folder - contain

Seite 83

PhoenixGetting Started Guide785objects in a project or workflow. The Diagram tab also shows the flow of the operational procedures.» Documents folder

Seite 84

Phoenix ConceptsPhoenix Terminology795license. System functions include drug modeling, statistical calculations, and data manipulation.» Project - a p

Seite 85

PhoenixGetting Started Guide805are created in an operational object and can be published to the Data folder.Phoenix Work ConceptsWork in Phoenix invol

Seite 86 - Phoenix Work Concepts

Phoenix ConceptsPhoenix Work Concepts815» Phoenix projects are designed to be easily updated and shared, which allows for better data management. Phoe

Seite 87

PhoenixGetting Started Guide825PK analysis, and any other models that Phoenix supports are added to the work-flow object.Root workflow with a sub-work

Seite 88

Phoenix ConceptsPhoenix Work Concepts835» Workflow objects allow users to put together as many types of operational objects as needed to complete an a

Seite 89

InstallationSystem and hardware requirements31Supported operating systemsThe following operating systems have been tested to ensure they are compatibl

Seite 90

PhoenixGetting Started Guide845What are the types of operational objects?Examples of operational objects include data manipulation objects such as Col

Seite 91

Phoenix ConceptsPhoenix Work Concepts855TemplatesA template in Phoenix works like a template in Microsoft® Word - it allows users to recreate the same

Seite 92

PhoenixGetting Started Guide865How are templates different from workflows and objects?» Templates do not store pointers to non-results data, such as i

Seite 93 - How is data used in Phoenix?

Phoenix ConceptsPhoenix Work Concepts875» User-created worksheets and workbooks.» Worksheets that are the results of operational objects.How is data u

Seite 94

PhoenixGetting Started Guide885

Seite 95

89IndexNumerics10019, server error, 28CCreate Template button, 68Customer support, 1licensing, 1DDiagram tab, 69HHistory tab, 73IInformation tab, 72In

Seite 96

PhoenixGetting Started Guide90RResults tab, 71SSetup tab, 69Show Dependents button, 68Show Sources button, 68TTechnical support, 1licensing, 1ToolbarC

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